As BassCliff suggested, you will be better off getting a replacement unit that integrates both the Rectifier and the Regulator into a single assembly.
It is a much more robust design. (Contact Duanage.)
If you stick with the current components, the problem is the regulator. It has a single lead which connects to one of the stator outputs. The ground is through the battery box, which is very unreliable. So just running a ground from that bolt through the rectifier to the battery negative takes care of your rectifier ground, but not necessarily your regulator ground. Any there is no ground wire coming off the regulator that you can run directly to battery negative.
If the regulator ground fails, then there is no place to sink any excess stator output. Result is a boiling battery and a failed stator.
The integrated replacement unit regulates the total rectifier output. There is one ground which you can run directly to battery negative. In the old design, one stator output is regulated, one is unregulated and the third is unregulated but only active when the headlight is on.


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