I may unfortunately have to throw it together for now with 673 pistons (wife taught me how many times/miles you can run a GS550 roller bearing engine with the oil light on... uuuugggghhhhhhh....), which prompted me to get on the ball to solve the missing induction system links on my end.
Yes, the vm28 kz1000 carbs appear to be able to directly swap into the gs550 rack using the gs550 fuel tee and couplers/rails.... but....
Turns out the gs750/850/1000 kz750-4/Z1-Z900/KZ1000 carb spacing lines up from what I can tell darn near PERFECT with the GS650 intake ports, wow!
The only issue is that the cam chain tunnel protrusion interferes with the carb rack. The gsxr and gs650 intake boots I have here are about 37mm tall, or rather head surface to end of carb mounting area, but the GS & KZ vm26/28 boots are a good but too short to bring the carbs away from this cam chain tunnel protrusion. And the vm26/28 intake boots have a bolt pattern that is not as wide as the bs32/bst33 carbs have that match the 650 head.
The gs650 and gixxer/katana carb boots are generally all offset up and over, but the Mikuni VM boots generally seem to go straight on with no offset.
In regards to the spacing issue and head tunnel intertference, I quickly ran out to the garage to look at my GS425 engines... BINGO! Almost all issues solved!
They have an "insulator" and gasket bolted to the head to extend the carb boots away from the head further to clear the cam chain tunnel area on them, and it looks to be the same spacing as the gs650 head and brings the carbs out just far enough!

I bought 4 more on ebay from seaching used parts under "Suzuki GS400" & "Suzuki GS425" to find listings for whatever name the seller decided to call these until I found 2 sets for cheap.
I'm not sure if this will bring the carbs out any further toward the rear of the upper double spine tubes on the feame, but long pods on a 5t0 don't ever fit well. Since these are now GS&KZ 1000/750 spacing, we can run my favorite open element air filters that are much more slender front to rear, the K&N RC-2222:


Here are 2 pictures of my GS750 with the K&N RC2222 dual oval universal filters on my vm29 smoothbores (both carbs and filters got stolen a week after these photos!!!) In the NE West Virginia (VA border) mountains. You can see lots of clearance to the frame spine behind them. An area where 550's have very little room - the reason why the similar lunchbox type filters and 88-97 600 katana carbs would be slightly problematic. I was very concerned about filter options not fitting those. We'll have to ask Boonton Mike what he did in this department, as these k&n lunchbox katana dual oval filters I have here are twice the height or horizontal installed depth as what the RC2222 filters are.


I'm not 100% guaranteeing this stuff will all work together, but aside from the bolt pattern difference between the vm26/28/29 intake boots and the 650 head/425 spacers, I am pretty certain this setup will be the hot ticket.
Also, this means VM29 smoothbores can be swapped right on!
The synch ports on gs750/1000's are in the heads, so I believe the better and cheaped choice may be 79 or so kz1000 vm28 boots as I believe they have the synch ports in the boot. You could also drill and tap them into these 400/425 spacers.
A machinist could also easily make up a replica of those 425 spacers with more meat to rotate the vm28 boot slightly away from the 650 head bolt pattern so the spacer would bolt to the head seperate from the carb boot, as one of the vm26 boot bolt holes is stacked halfway over the gs650&gs425 head bolt holes for the boots. I may slot the used vm26 boot bolt holes and use large washers to apply pressure more inward where the boot was intended, just to get it by for now.
Very excited to say the least. Now if only a Wiseco 740cc gs650e engine with megacycle cams and vm29 smoothbores would fit into my Rickman frame without custom exhaust headers, I'd be set!
This is getting better and better, and I'm thinking that if my wife gets a kz1000Ltd 1075cc tourer (since she blew up her 550 and wants a bike NOW), my gs550 rebuild for her will still be something she very much chooses to ride over the 540lb monster kawi.
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