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I need to clean up that starter relay....looks kinda yucky 
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Only problem I can see is a bit of popping when letting off the throttle - hopefully it's an air leak as I have a set of o-rings and intake boots on order.
Congratulations, nothing like that feeling of getting an engine running right with jets you changed yourself. I bet your popping on trailing throttle is lean pilots, not an air leak. It will get worse once you are running and have the engine pulling fuel through on trailing throttle. On the plus side, going to the next size up pilot jets will eliminate all or most of it and it is not a destructive problem, merely a nuisance.
Note that you will need to re-check your mains after changing the pilots, as the lower circuits affect the higher ones. Also, don't forget to synch your carbs after tweaking the jetting.
Mark
Yes, the pods make 'em louder! \\/ Alot more throatier, and you can hear the air rushing in.
Without going back through 100 pages, what mods are on the engine now? Just the pods, pipe and jet kit? If those are the only mods, I would do some chop tests before you change the pilots (or anything else). Sounds like you my have fixed your lean condition fixing the leaks.
I've got a Colortune you can use while you're up here in July.
You're right about the lean pilots - that's the next circuit that needs tweaking. I have the air screw turned way out to richen the mixture and get it to idle at about 1100 RPM. Turning the air screw in to the recommended 2-2.5 turns out results in a super lean condition - the idle goes to about 4000 RPM. It starts up immediately with just a tiny bit of choke and immediately idles at about 1100 RPM by just using the air screw to richen it up, any harm in leaving it be the way it is?
Thanks for the offer on the Colortune - how does it work?
Alright-
Last big issue/challenge with this build is chain alignment. The sprocket sticks out too far to the left by about 1/2", even with the cush drive rubbers shaved down 15 mm. Rather than hacking another 1/2" from the left side of the cush drive on the 6.0" 2006 GSXR 1000 wheel (and associated mods like new spacers etc), would it be easier to just use a 5.5" 2004/2005 GSXR 750 wheel? Would this bring the chain in any further by using the 5.5" wheel vs. the 6.0" wheel?
Alright-
Paging Johnnay and other folks using newer GSXR 600/750 rear wheels.
What's the measurement from the outside of the rear sprocket to the outside of the rear brake disc on your wheel? I'm measuring 8.25" with the 2006 GSXR 1000 rear wheel.
8 & 1/16" for mine, although the sprocket carrier sticks out from the wheel and could be reduced by ~.25". I think you'd definitely have an easier time with a 5.5" wheel.
btw, got your PM on the axle size - sorry for not replying earlier - It's 25mm.
Does the trimmed down dampers really move the sprocket carrier in? You still have the bearing support which if the correct one will keep the sprocket carrier at the same position even with trimmed dampers. The bearing support would need shortening too. You would need to shorten the side between the sprocket carrier bearing and the hub bearing the same amount you trimmed the dampers.The sprocket sticks out too far to the left by about 1/2", even with the cush drive rubbers shaved down 15 mm.
Does the trimmed down dampers really move the sprocket carrier in? You still have the bearing support which if the correct one will keep the sprocket carrier at the same position even with trimmed dampers. The bearing support would need shortening too. You would need to shorten the side between the sprocket carrier bearing and the hub bearing the same amount you trimmed the dampers.
8 & 1/16" for mine, although the sprocket carrier sticks out from the wheel and could be reduced by ~.25". I think you'd definitely have an easier time with a 5.5" wheel.
Also starting to doubt that this bike will be ready in time for the Yosemite/Tahoe rally, but there *is* a 2002 Bandit 1200 with only 1200 miles in the local classifieds for a song....
Any updates? You got that beast flying down the road yet? :-D