I'm happy you found out what's going on. Your taking it off the pistons, not the head, right? It would be better if you could mill it off. Balance issues and what not, I wouldn't touch the top of the combustion chamber. You should weight each piston and make sure they weight the same.
It's always better to take your time and be ultra careful. It's not only time and money, but effort and experience, and the thrill when you go down on that much hotter bike that give you that incredible feeling when you riding on an engine you rebuilt. It's addictive. I've been lucky and have built a few, including a couple of Lycoming Engines(When I was training for an A&P license), 4.5 liter Mercedes V-8, a straight 6 dual overhead cam 280C Mercedes engine, and a few more bike engines. The feeling is addictive, makes you want to jump into another one.
It's always better to take your time and be ultra careful. It's not only time and money, but effort and experience, and the thrill when you go down on that much hotter bike that give you that incredible feeling when you riding on an engine you rebuilt. It's addictive. I've been lucky and have built a few, including a couple of Lycoming Engines(When I was training for an A&P license), 4.5 liter Mercedes V-8, a straight 6 dual overhead cam 280C Mercedes engine, and a few more bike engines. The feeling is addictive, makes you want to jump into another one.

